Publications

Phylostratigraphic analysis of tumor and developmental transcriptomes reveals relationship between oncogenesis, phylogenesis and ontogenesis

Joseph X. Zhou, Luis Cisneros, Theo Knijnenburg, Kalliopi Trachana, Paul Davies, Sui Huang (2018). Convergent Science: Physical Oncology. IOP Science.

Abstract

Re-Conceptualizing the Origin of Life

S.I. Walker, N. Packard and G. Cody (2017) Re-Conceptualizing the Origin of Life. Phil. Trans. Roy. Soc. A.  375:20160337

How Causal Analysis Can Reveal Autonomy in Models of Biological Systems

W. Marshall, H. KimS.I. Walker, G. Tononi, and L. Albantakis (2017) How Causal Analysis Can Reveal Autonomy in Models of Biological Systems. Phil. Trans. Roy. Soc. A.  375:20160358

Prebiotic RNA Network Formation: A Taxonomy of Molecular Cooperation.

C. Mathis*, S. Ramprasad, S.I. Walker, and N. Lehman (2017) Prebiotic RNA Network Formation: A Taxonomy of Molecular Cooperation. Life 7(4):38.

An Information Theoretic Classification of Elementary Cellular Automata.

E. Borriello** and S.I. Walker (2017) An Information Theoretic Classification of Elementary Cellular Automata. Complexity. Article ID 1280351

Cancer as a Disorder of Patterning Information: computational and biophysical perspectives on the cancer problem

D. Moore**,  S.I. Walker, and M. Levin (2017) Cancer as a Disorder of Patterning Information: computational and biophysical perspectives on the cancer problem. Convergent Science Physical Oncology. 3(4): 043001.

Ancient genes establish stress-induced mutation as a hallmark of cancer

Cisneros, L., Bussey, K. J., Orr, A. J., Miočević, M., Lineweaver, C. H., & Davies, P. (2017). Ancient genes establish stress-induced mutation as a hallmark of cancer. PloS One, 12(4), e0176258

Physical Universality, State-Dependent Dynamics and Open-Ended Evolution

A. Adams*, A. Berner*, P.C.W. Davies and S.I. Walker (2017) Physical Universality, State-Dependent Dynamics and Open-Ended Evolution. Entropy. 19(9): 461.

Physical Universality, State-Dependent Dynamics and Open-Ended Evolution

A. Adams*, A. Berner*, P.C.W. Davies and S.I. Walker (2017) Physical Universality, State-Dependent Dynamics and Open-Ended Evolution. Entropy. 19(9): 461.

Origins of Life: A Problem for Physics, A Key Issues Review

S.I. Walker (2017) Origins of Life: A Problem for Physics, A Key Issues Review. Reports on Progress in Physics.  80(9): 092601

Pages